cjz
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mutect2.bam could not find the mutation, but bqsr found the mutation
AnsweredI use a bed to find mutations and use the mutect2 process. Normal samples and tumor samples use mutect2 for mutation detection. After importing the bam file of bqsr into IGV, I found that this site...
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Different panels detect the same site, there are two different annotations, somatic and germline
I used mutect2 to detect mutations, and used FilterMutectCalls to detect mutations. The first time I used a panel to detect mutations, the site was somatic mutation (PASS), but the second time I us...