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Дмитрий Голик

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Latest activity by Дмитрий Голик
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    Дмитрий Голик commented,

    I discovered that the newer version of the article exists: https://gatk.broadinstitute.org/hc/en-us/articles/5358906115227-VariantRecalibrator . As exists for every tool of every version: https://g...

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    Дмитрий Голик created a post,

    Too many duplicate articles

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    Hello! There is one article for each gatk tool for each gatk version. So when i search something at the gatk site, i am offered with hundreds of slightly different results. And when i search with g...

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    Дмитрий Голик commented,

    > VQSR is probably the hardest part of the Best Practices to get right, so be sure to read the method documentation, parameter recommendations and tutorial All three links are broken! Maybe there a...

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    Дмитрий Голик commented,

    David Benjamin unfortunately there is not description for every possible filtering outcome. And how i should handle MNPs in GATK 4?

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    Дмитрий Голик created a post,

    HaplotypeCaller and GenotypeGVCFs

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    Hello! This article https://gatk.broadinstitute.org/hc/en-us/articles/360035535932-Germline-short-variant-discovery-SNPs-Indels- says i should use HaplotypeCaller in GVCF mode and GenotypeGVCFs the...