Mehdi
Computational Genomics and Bioinformatics
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Latest activity by Mehdi-
Mehdi commented,
Hi Everyone,As a quick solution, I recommend the following Conda environment which worked well for me. Note that all of them are not required Python dependencies. Dear SkyWarrior your comments are ...
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Mehdi commented,
Hi Muhammad Thanks for your comments. I've used a pipe of "egrep" and "awk" on the SAM files and it worked very well. Also, "sed" worked well on ref. genome. Best.
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Mehdi commented,
Muhammad Shoaib Akhtar Thanks, my problem is that there are a lot of contigs and as it seems I should list all of them in the priority table. I'm going to remove them (contigs with the unknown posi...
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Mehdi commented,
Hi Muhammad,I'm working on the camel. Genome is assembled at chromosome level but as always there is a lot of contigs in the ref. For making the priority table should I discard them in the sam/bam ...