Thomas Juettemann
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Latest activity by Thomas Juettemann-
Thomas Juettemann commented,
Hello Genevieve Brandt (she/her), thanks for the document. The main issues I am encountering are with the reserved keywords in the INFO field (see p5 here). sortVCF changes some of them, see exampl...
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Thomas Juettemann commented,
Hello Genevieve Brandt (she/her), one more question: I have a VCF file with these two lines: ##bcftools_viewCommand=view -R /scratch/genes_with_omim_id.bed Sample_Diag-hard-filtered.vcf.gz##bcftool...
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Thomas Juettemann commented,
Hello Genevieve Brandt (she/her), thanks for your reply. Is this assumption correct: Contig lines are last in the header, and their order is not changed Other lines are sorted by:1. First letter o...
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Thomas Juettemann created a post,
picard sortvcf: what does it do?
AnsweredHello Everyone, This is a general question about the inner-working of sortVCF from a newbie. Ordering the records by position is straightforward, but there seem to be quiet a few rearrangements ha...