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3. GenomincsDBImport Failed to create reader from file: An index is required, but none found., for input source:

Sounds good, thanks for the help!

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• Morgan Sparks
• October 12, 2021 20:02
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3. GenomincsDBImport Failed to create reader from file: An index is required, but none found., for input source:

As in  sample_name1 sample_name1.g.vcf.gz.csisample_name2 sample_name2.g.vcf.gz.csisample_name3 sample_name3.g.vcf.gz.csisample_name4 sample_name4.g.vcf.gz.csi Or just sample_name1.g.vcf.gz.csisamp...

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• Morgan Sparks
• October 12, 2021 19:52
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3. GenomincsDBImport Failed to create reader from file: An index is required, but none found., for input source:

Thanks, that makes sense. I thought about that when I was reading the documentation, but I was confused as to what exactly put there. My file map has 134 samples, so do I just direct --read-index t...

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• Morgan Sparks
• October 12, 2021 18:40
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3. markduplicatesSpark .bam.parts output error (directory already exists)

Genevieve Brandt (she/her) that does seem to have fixed it, should I expect to have to do this with all ___Spark related commands in gatk? Thanks!

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• Morgan Sparks
• October 01, 2021 18:23
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