chenglei
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Can you explain what is a good cigar string more specifically？ 150M is a good cigar, then what about 10S100M40H? I did not find a good explaination in SAM specifications. Hope your response
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Hi,I'm a newer to gatk. I try to use gatk to call germline mutation from my tumor data. I see that there are to modules, per-sample and joint genotyping, I wonder that per sample module compatible ...
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is a dbsnp file in HaplotypeCaller and a couple of other programs (e.g. GenotypeGVCFs) a file like dbsnp_146.hg38.vcf.gz, if germline mutation calling for Homo_sapiens?
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my tumor sample are from different individuals
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Thank your response. But I am still confused. As it was pointed out in “A step-by-step guide to the new Mutect2 Read Orientation Artifacts Workflow”, “When multiple tumor samples are specified, you...