
Carlos P Arques
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Activity overview
Latest activity by Carlos P Arques-
Carlos P Arques commented,
Hi Pamela Bretscher, Thank you for looking into it. 1. The wild-type was a VCF file, but when I examined it closely I found out that there were a lot of positions that had a GT = 0, i.e. same as th...
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Carlos P Arques created a post,
SelectVariants --discordance not working as I expected
AnsweredHi!a) I'm using GATK4-4.2.0.0-1b) gatk SelectVariants -V $combined.vcf.gz -R $genome --discordance $wildtype.vcf -O $discordant.combined.vcf.gzc) Why do I see (......)? But I don't retrieve any var...