Avatar

Domniki Manousi

Follow
  • Total activity 7
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 0
  • Subscriptions 4

Activity overview

Latest activity by Domniki Manousi
  • Avatar

    Domniki Manousi commented,

    1. Community
    2. Non-Human
    3. FindBreakpointEvidenceSpark sudden shutdown

    dear Genevieve Brandt (she/her) thank you for you fast reply the bam file was originally aligned to the same reference file that I used on the tool.I tried using samtools to retain only mapped read...

  • Avatar

    Domniki Manousi commented,

    1. Community
    2. Non-Human
    3. How do I call germline variants with multiple samples -non human?

    Dear Genevieve Brandt (she/her)  I am also looking into the GATK-SV tool to identify variants in non-human genomes. Is the tool still restricted to human-genome use? If yes, then would the beta too...

    • View comment
    • Domniki Manousi
    • Edited
    • 0 votes
  • Avatar

    Domniki Manousi created a post,

    FindBreakpointEvidenceSpark sudden shutdown

    Answered
    1. Community
    2. Non-Human

    Hi, I am trying to run the tool FindBreakpointEvidenceSpark. I have successfully  produced the required kmers and the tool seems to run for several minutes until it finally stops without producing ...

    • Domniki Manousi
    • 2 followers
    • 4 comments
    • 0 votes