Alex Lee

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Latest activity by Alex Lee
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    Alex Lee commented,

    Beri thanks. What is bizaare is that even if I hard coded the file names, what just get rid of read_string() then there are other errors.  I've just pretty much given up on this since it would've b...

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    Alex Lee commented,

    Beri thanks. What is strange is that each subdirectory looks fine.  There are no errors. and both tumor_name.txt and normal has a text to the file names. Each subdirectory has a a output vcf. Stdou...

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    Alex Lee created a post,

    Help with WDL workflow for mutec2?


    Hi this is concerning the workflow: https://github.com/gatk-workflows/gatk4-somatic-snvs-indels Not sure where to ask but I thought I  try here first.  I'm trying to run the example in the json loc...