Nicolas Loucheu
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Activity overview
Latest activity by Nicolas Loucheu-
Nicolas Loucheu commented,
Hi ISmolicz, We are still using Mutect1 for that pipeline, but we haven't tried yet newer versions than 4.1.9.0 of Mutect2, maybe some update corrected that issue or added a parameter to solve it. ...
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Nicolas Loucheu created a post,
Expected variants not detected by Mutect2
AnsweredDear GATK, We are currently trying to implement a pipeline to detect tumor mutations. We followed the "Somatic short variant discovery (SNVs + Indels)" Best Practices Workflow, using our own vali...