Avatar

Nicolas Loucheu

  • Total activity 3
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 0
  • Subscriptions 1

Activity overview

Latest activity by Nicolas Loucheu
  • Avatar

    Nicolas Loucheu commented,

    Hi ISmolicz, We are still using Mutect1 for that pipeline, but we haven't tried yet newer versions than 4.1.9.0 of Mutect2, maybe some update corrected that issue or added a parameter to solve it. ...

  • Avatar

    Nicolas Loucheu created a post,

    Expected variants not detected by Mutect2

    Answered

    Dear GATK,   We are currently trying to implement a pipeline to detect tumor mutations. We followed the "Somatic short variant discovery (SNVs + Indels)" Best Practices Workflow, using our own vali...