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Gilgamesh

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Latest activity by Gilgamesh
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    Gilgamesh commented,

    Hi Gökalp, It should be noted that I am getting a core dump midway between the running of the BWA command with 32 threads and 128 gb memory. So the issue seems to be unreplicable, interestingly, th...

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    Gilgamesh commented,

    Hi Gökalp,   Thanks for the reply, the input file is 115 KB, and looks right. Also the paths are functioning and read right in the debug window.   Speaking of the input file, here are the first few...

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    Gilgamesh created a post,

    GATK MarkDuplicates Missing output file

    I am receiving no output file for my GATK run, although it seems the input is working.    a) GATK version used:  module load gatk/4.1.8.1-gcc-2onk b) Exact command used: gatk MarkDuplicates -I $OUT...