Jonah Daneshmand

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Latest activity by Jonah Daneshmand
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    Jonah Daneshmand commented,

    Hi Gökalp, thanks for your response. I am in fact using Docker, but not slurm or any other job scheduler.  Here's an example of how I'm running the commands (from R): # Function to execute the Appl...

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    Jonah Daneshmand created a post,

    Issue with RNA-seq Variant Calling Pipeline using GATK

    Hello GATK community, I'm encountering an issue while processing BAM files through an RNA-seq variant calling pipeline using GATK tools. I would greatly appreciate your insights and guidance in res...