Avatar

Jonah Daneshmand

Follow
  • Total activity 5
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 2
  • Subscriptions 1

Activity overview

Latest activity by Jonah Daneshmand
  • Avatar

    Jonah Daneshmand commented,

    1. Community
    2. Germline
    3. Issue with RNA-seq Variant Calling Pipeline using GATK

    Hi Gökalp, thanks for your response. I am in fact using Docker, but not slurm or any other job scheduler.  Here's an example of how I'm running the commands (from R): # Function to execute the Appl...

    • View comment
    • Jonah Daneshmand
    • Edited
    • 0 votes
  • Avatar

    Jonah Daneshmand created a post,

    Issue with RNA-seq Variant Calling Pipeline using GATK

    1. Community
    2. Germline

    Hello GATK community, I'm encountering an issue while processing BAM files through an RNA-seq variant calling pipeline using GATK tools. I would greatly appreciate your insights and guidance in res...

    • Jonah Daneshmand
    • Edited
    • 2 followers
    • 3 comments
    • 1 vote