Nick Dietz
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Latest activity by Nick Dietz-
Nick Dietz commented,
We have avoided upgrading to the versions of GATK that have this change because we have several downstream tools that rely on the './.' format to detect a missing genotype call. Currently, we are u...
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Nick Dietz commented,
Thank you, Gökalp Çelik. Does that mean that HaplotypeCaller is ONLY using the reads prefixed with "HC" to call variants? Or are the other reads (the ones with the original names) being used as well?
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Nick Dietz commented,
When inspecting the bamout file, I notice that the query name (column #1) has a mix the of the original read names and reads whose names are HC01, HC02, etc. Can anyone tell me the distinction betw...