JooYoung Park
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Activity overview
Latest activity by JooYoung Park-
JooYoung Park commented,
Can GenomicsDBImport be resumed if it halts in the middle of the processing?
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JooYoung Park commented,
sorry I am using GATK 4.2.0.0
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JooYoung Park created a post,
GenomicsDBImport takes to much time with 6075 g.vcf
I am currently running GenomicsDBImport for only chr1 before the jointgenotyping, This been running for 5 days but still in the process under. Is there a way to reduce the time? I should finish thi...
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JooYoung Park created a post,
Switching version of gatk during the workflow
I have currently generated g.vcf files for each sample with gatk 3.4 . Now I am in the middle of jointgenotyping with 6092 samples, which takes too long. Therefore I am trying to switch gatk versio...
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JooYoung Park created a post,
GatherBQSRReports OSError: [Errno 2] No such file or directory, but does not show which is missing
I am currently using GATK 4.1.2 for analysis and encountered error 'OSError: [Errno 2] No such file or directory, but does not show which is missing ' when running GatherBQSRReports. With the error...
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JooYoung Park created a post,
GatherBQSRReports OSError: [Errno 2] No such file or directory, but does not show which is missing
I am using gatk-4.1.2.0 and trying to run GatherBQSRReports. However, I am encountering error above, without having an idea which file or directory is missing. I have checked that all input files a...