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Rami Kheireddine

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Recent activity by Rami Kheireddine Sort by recent activity Recent activity Votes
  • Annotation for variant calling

    REQUIRED for all errors and issues: a) GATK version used: 4.4.0.0b) Exact command used: gatk-4.4.0.0/gatk VariantAnnotator     -R /home/databench/GRCz11_RefData/GRCz11.fa     -A SnpEff     --varian...

  • Annotate using funcotator

    I am trying to use : ./gatk Funcotator \     --variant variants.vcf \     --reference Homo_sapiens_assembly19.fasta \     --ref-version hg19 \     --data-sources-path funcotator_dataSources.v1.2.20...

  • Haplotype caller taking too long

    REQUIRED for all errors and issues: a) GATK version used:4.2.3.0b) Exact command used: gatk HaplotypeCaller -R /home/databench/GRCz11_RefData/GRCz11.fa -I Routput_sorted_dedup_bqsr_reads.bam -O Rou...