Rami Kheireddine
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Recent activity by Rami Kheireddine Sort by recent activity-
Annotation for variant calling
REQUIRED for all errors and issues: a) GATK version used: 4.4.0.0b) Exact command used: gatk-4.4.0.0/gatk VariantAnnotator -R /home/databench/GRCz11_RefData/GRCz11.fa -A SnpEff --varian...
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Annotate using funcotator
I am trying to use : ./gatk Funcotator \ --variant variants.vcf \ --reference Homo_sapiens_assembly19.fasta \ --ref-version hg19 \ --data-sources-path funcotator_dataSources.v1.2.20...
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Haplotype caller taking too long
REQUIRED for all errors and issues: a) GATK version used:4.2.3.0b) Exact command used: gatk HaplotypeCaller -R /home/databench/GRCz11_RefData/GRCz11.fa -I Routput_sorted_dedup_bqsr_reads.bam -O Rou...