Rômulo Carleial
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Recent activity by Rômulo Carleial Sort by recent activity-
GATK GenotypeGVCFs stuck at starting traversal
Hi, I am trying to joint call SNPs using 5million BP intervals. My HPC only allows for 10d jobs, and calling intervals larger than that leads to failure (lack of time). I have managed to call 104 5...
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HOW TO EXCLUDE FILTERED VARIANTS WITH VARIANTFILTRATION?
Hi. I am using GATK 4.2.6.1. I want to exclude the variants filtered with VariantFiltration, without having to run SelectVariants. My vcf file is 3TB heavy, and it makes absolutely no sense to pro...