Mariana E. M.
Biomedical AI Researcher
- Total activity 12
- Last activity
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Activity overview
Latest activity by Mariana E. M.-
Mariana E. M. commented,
SOLVED: I realized that this information is actually contained in the VCF file as allele depth (AD), reporting the number of reads supporting the reference and alternative allele. The identifier (A...
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Mariana E. M. created a post,
SOLVED: Get read counts of Mutect2 somatic variants
Dear GATK community, I performed short somatic variant calling with Mutect2 - what would be the best way of getting the read count for every detected variant?I want to get both the number of reads...
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Mariana E. M. commented,
David Benjamin thank you very much for your reply, this was helpful.I will check the use terms of the gnomAD files. I suppose the other files in the bucket can also be used freely, right?
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Mariana E. M. created a post,
License / use terms for GATK resource bundle
Hi, I am intending to use the GATK toolbox and some of the files provided in the best practices resource bundle for research with commercial purposes. More specifically, I am interested in the fil...