Roller, Eric
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Latest activity by Roller, Eric-
Roller, Eric commented,
If there is 50/50 chance that the variant is present, what should the QUAL be?I would expect -10log10(0.5) = ~3But if you are normalizing similar to how your PL values are normalized then this may ...
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Roller, Eric commented,
If there is 50/50 chance that the variant is present, what should the QUAL be?I would expect -10log10(0.5) = ~3But if you are normalizing similar to how your PL values are normalized then this may ...
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Roller, Eric commented,
Can you confirm that this definition of GQ is different than the GQ defined in the VCF spec? From the spec:GQ (Integer): Conditional genotype quality, encoded as a phred quality −10log10 p(genotype...
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Roller, Eric commented,
Can you confirm that this definition of GQ is different than the GQ defined in the VCF spec? From the spec:GQ (Integer): Conditional genotype quality, encoded as a phred quality −10log10 p(genotype...