yh guo
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"Some GATK tools only exist in a Spark-capable version Those tools don't have the "Spark" suffix." Is it mean tools like CombineGVCFs can run with paremater of --conf 'spark.executor.cores=8'?
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Could I use CombineGVCFs to merge : [1] gvcf files produced from GenotypeGVCFs with --intervals different chrosomes and [2] some gvcf files produced from GenotypeGVCFs without --intervals argument ...
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Hi, I was recently confused about the parameters of sortbam in the call snp flow. At the main steps, you mentioned "SAM/BAM format sorted by coordinate", even in wdl script of "Data Pre-processing"...