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yh guo

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Latest activity by yh guo
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    yh guo commented,

    1. Technical Documentation
    2. Glossary
    3. Spark

    "Some GATK tools only exist in a Spark-capable version Those tools don't have the "Spark" suffix." Is it mean tools like CombineGVCFs can run with paremater of --conf 'spark.executor.cores=8'?

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    yh guo commented,

    1. Tool Index
    2. 4.4.0.0
    3. CombineGVCFs

    Could I use CombineGVCFs to merge : [1] gvcf files produced from GenotypeGVCFs with --intervals different chrosomes and [2] some gvcf files produced from GenotypeGVCFs without --intervals argument ...

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    yh guo commented,

    1. Getting Started
    2. Best Practices Workflows
    3. Data pre-processing for variant discovery

    Hi, I was recently confused about the parameters of sortbam in the call snp flow. At the main steps, you mentioned "SAM/BAM format sorted by coordinate", even in wdl script of "Data Pre-processing"...