Rahul Yadav
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Activity overview
Latest activity by Rahul Yadav-
Rahul Yadav commented,
The GATK BaseRecalibrator tool is used to recalibrate the base quality scores of a sequencing dataset, based on known variant sites in a VCF file. If you do not have a known sites VCF file, you can...
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Rahul Yadav commented,
I have downloaded the hg38 fasta and gtf files from the ensemble for the STAR index. After that when I reached at BQSR step I need known variations VCF file but I cannot find the vcf file for the s...
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Rahul Yadav commented,
I can't find a gtf file for Homo_sapiens_assembly38 in the resource bundle v0 - genom…blic-data – Bucket details – Cloud Storage – Google Cloud console
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Rahul Yadav commented,
Hi, I am using gatk for somatic cell mutation using RNAseq data, I have download reference genome fasta and gtf from the ensemble and as I cannot find known site variation in vcf format there, on e...