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Tristan Dennis

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Latest activity by Tristan Dennis
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    Tristan Dennis created a post,

    GenotypeGVCFs 'Cannot decompress with GZIP: inflate error: Z_DATA_ERROR'

    Hi, I am running into this issue using GenotypeGVCFs on a GenomicsDB of 412 samples. The error seems to happen after encountering the 'Chromosome CM023249 position 134311 (TileDB column 93840333) h...

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    Tristan Dennis commented,

    Hi there - sorry for the delay. I found the source of the error. The genome FASTA was truncated around halfway through the first chromosome. I had used a different file to the one I have on the GPU...

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    Tristan Dennis created a post,

    GenomicsDBImport error - non-standard non-IUPAC base

    Hi there,  I am trying to output a multisample VCF from a genomicsDB. The GenomicsDB was created with 108 g.vcf files, in turn generated using Clara Parabrick's accelerated germline pipeline (v4.0....