
Matteo Costacurta
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Recent activity by Matteo Costacurta Sort by recent activity-
Hi James, I had to re-download all the files from the bucket. I decompressed with bcftools, indexed with IndexFeatureFile and they all validated with ValidateVariants, except resources_broad_hg38...
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Hi Genevieve, I am experiencing the same problem while trying to use BaseRecalibrator. Unable to parse header with error: Your input file has a malformed header: We never saw the required CHROM he...
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Hi ISmolicz, Those two options successfully forced the calling of all the variants in my bam files, so that worked fine for me. I am using GATK 4.3.0.0. Without those options, Mutect2 would just ig...
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Hello GATK team, I am currently experiencing similar issues with calling variants from some genes with possibly some complexity, such as FLG, with Mutect2 (versions 4.1.2.0, 4.2.2.0 and 4.3.0.0) no...