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Wondessen Ayalew

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Recent activity by Wondessen Ayalew Sort by recent activity Recent activity Votes
  • VCF file SNP ID missing

    REQUIRED for all errors and issues: a) GATK version used:  GATK 4.3.0b) Exact command used:  I used the command stated on gatk4.3.0 without any modifications and I  combine and genotyped my vcf fil...

  • ApplyBQSR

    REQUIRED for all errors and issues: a) GATK version used: GATK4.3  b) Exact command used: gatk ApplyBQSR -R ../reference/Bos_taurus.ARS-UCD1.2.dna.toplevel.fa -I ../data/mapped/ABigar/Abi1_dedup.ba...

  • GATK configration

    REQUIRED for all errors and issues:  I am running gatk for the first time the BaseRecalibrator toolsa) GATK version used: 4.3.0b) Exact command used: gatk BaseRecalibrator -I ../data/Afar_rD/Afar_1...