Shirliya Dadon
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Activity overview
Latest activity by Shirliya Dadon-
Shirliya Dadon commented,
Thanks, Genevieve! I tried turning off the java garbage collector, and it seemed to free up memory since the program ran longer but it crushed with a different error and on a different site, here i...
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Shirliya Dadon commented,
Hi Genevieve Brandt (she/her), Thanks for the quick response! From what I've found: There is plenty of memory and disk space available (I allocated 100G for the memory), the same goes for --tmp-di...
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Shirliya Dadon created a post,
GC overhead limit exceeded using Mutect2 only tumor version
AnsweredHi! I have been trying for a while to get Mutetc2 to work in the only tumor mode. Each time I get a GC error after a longer run time and it goes through more regions (that is the result of a bigger...