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3. How can I build the GATK jar so that the intel native libraries are available?

I found the solution. I was running the built GATK jar file in a Docker container that didn't contain the libgomp library which turns out to be a required dependency of the intel AVX native code in...

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• Mark Schreiber
• September 23, 2022 20:54
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1. Community
2. Other
3. How can I build the GATK jar so that the intel native libraries are available?

Sorry, by "official" I mean the one bundled with the latest GATK release available here https://github.com/broadinstitute/gatk/releases/tag/4.2.6.1

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• Mark Schreiber
• September 23, 2022 00:44
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