Rahul Gupta
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Activity overview
Latest activity by Rahul Gupta-
Rahul Gupta commented,
Hi -- checking back in! We're hoping to use this in a production application so curious if you have any updates on the next GATK release.
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Rahul Gupta commented,
Hi -- just wanted to check in regarding the next GATK release. Do you have a sense for when this is planned to happen? Thanks!
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Rahul Gupta commented,
Fantastic! Thank you for the notification, and thanks to the team for taking a look at this!
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Rahul Gupta commented,
Nice, thank you Genevieve! Looking forward to getting my hands on the new version when it's ready.
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Rahul Gupta commented,
Thanks for your response! The upload is complete -- the file is `220211_RG_bug_report_mutect2.zip`. In it are two folders; each of which is a sample which has exhibited this issue. In each folder `...
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Rahul Gupta commented,
Hi Genevieve, Thanks for your reply! Sure. The variant of interest is 8316:T>C. Here are the next few variants if I run using the above command (which doesn't force-call it; though 8517:C>T and 864...
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Rahul Gupta created a post,
In Mutect2 force-calling allele via --alleles does not force-call the allele
AnsweredIf not an error, choose a category for your question(REQUIRED):c) Why do I see (......)? GATK version: 4.2.4.1 Hi all, I'm running Mutect2 over samples for which I have provided a VCF of alleles th...