蒲鹏
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Activity overview
Latest activity by 蒲鹏-
蒲鹏 commented,
Hi,@Genevieve Brandt Problem solved! First, I slected snp-only.vcf from gnomad.genomes.r2.1.sites.liftoverToHg38.INFO_ANNOTATIONS_FIXED.vcf.gz using SelectVariants, and got interval_list by Interva...
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蒲鹏 commented,
Hi, I figured out that it was caused by wrong interval_list input. it should be snp-only.interval_list, but I didn't find any online file. I'm working on generating it by myself. Do you know where ...
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蒲鹏 created a post,
"main" java.lang.OutOfMemoryError: Requested array size exceeds VM limit
AnsweredHi, GATK team! I'm working on GATK WGS somatic CNV calling pipeline. When I tried gatk --java-options "-Xmx2800g" ModelSegments --denoised-copy-ratios ${tumor}.denoisedCR.tsv --allelic-counts ${tum...