Arosato
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Hi Genevieve, I figured as much, perhaps I can convince my group to investigate running the GATK-SV single sample terra workflow. Thanks for getting back to me! Best, Andrew
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Hi Pamela, That's exactly the information I was looking for! Thanks for your response and the article link! Best, Andrew
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Hi Pamela, Thanks for the response, unfortunately this answer leaves me with more questions. I am running the https://app.terra.bio/#workspaces/help-gatk/GATK4-Germline-Preprocessing-VariantCalling...
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Hi GATK Team, I noticed the message "Input bam file(s) from which to make variant calls" in the Input subsection. Further down, I noticed in the Haplotype Specific Arguments section that the --inp...