
Han Li
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What's wrong with my GATK HaplotypeCaller result without ALT
AnsweredHello,I used the gatk 4.2.3.0 and STAR 2.7.9a, cellranger 6.1.2 to make the scRNA SNPs detection but i got a wrong. Here i used the bam from the cellranger 6.1.2 which use the star for mapping. And...
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What's wrong with my GATK HaplotypeCaller step's codes?
I use the Linux conda to install the GATK for uses and here's the conda list. I use the code as this . I'm sure the path for these data is correct, but the Linux always return an error like ".fast...