Dr N Ch
- Total activity 24
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 3
- Subscriptions 6
Activity overview
Latest activity by Dr N Ch-
Dr N Ch commented,
CONTIG_NAME PLOIDY_PRIOR_0 PLOIDY_PRIOR_1 PLOIDY_PRIOR_2 PLOIDY_PRIOR_3chr1 0.01 0.01 0.97 0.01chr2 0.01 0.01 0.97 0.01chr3 0.01 0.01 0.97 0.01chr4 0.01 0.01 0.97 0.01chr5 0.01 0.01 0.97 0.01chr6 0...
-
Dr N Ch commented,
Docker image... no clue what it it.. will ry out...any help file to use the code.
-
Dr N Ch created a post,
GATK:CNV calling pipeline: error at step "GermlineCNVCaller program": org.broadinstitute.hellbender.utils.python.PythonScriptExecutorException: python exited with 139
AnsweredGenevieve Brandt (she/her) If you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk-4.2.0.0 conda version used: miniconda3, conda 4.10.3 b) Exact command used: /home/...
-
Dr N Ch commented,
Genevieve Brandt command used: /home/Applications/gatk-4.2.0.0/gatk GermlineCNVCaller \--run-mode COHORT \-L /home/Projects/CNV/5.cohort.interval_list \-I /home/Projects/CNV/80.tsv -I /home/Pro...
-
Dr N Ch commented,
Thank u..
-
Dr N Ch commented,
Muhammad Shoaib Akhtar: Yes I am working on human genome! how can in make changes as per my sample sets.
-
Dr N Ch commented,
The model has been created with "DetermineGermlineContigPloidy" and the command successfully worked... the next step is to call GermlineCNVCaller : when i tried to execute it... it is throwing up t...
-
Dr N Ch commented,
Thank you Lithium22! Mine is a mixed population and yes humans! Can u let me know how are the proportions adjusted!
-
Dr N Ch commented,
Hi, Thank you for the response... I am currently following the protocol as in the link shared above.. I can get hold of 100 samples... but now i am trying with 5 samples... to setup the steps .. I ...
-
Dr N Ch commented,
Genevieve Brandt Hi... Should we run "GermlineCNVCaller --run-mode COHORT" step first... to make work GermlineCNVCaller --run-mode CASE? 1. Initially i tried running case step only and it exited w...