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How do I know what interval to use, nothing I seem to input works? If you are seeing an error, please provide(REQUIRED) : a) GATK version used: apps/gatk/4.2.2.0/noarchb) Exact command used:gatk --...

• Bekah W
• November 26, 2021 14:23
• 2 followers
• 19 comments
• 0 votes

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2. New User Advice

Hiya,I have been trying to rename sample in single sample GVCF using the picard  RenameSampleInVcf function. However it gives me ERROR: Invalid argument '50'.Input: picard RenameSampleInVcf \I=Path...

• Bekah W
• November 23, 2021 22:08
• 2 followers
• 3 comments
• 0 votes

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2. New User Advice

Why do I see all MQ as 60 in my variant SNP VCF file?

• Bekah W
• November 13, 2021 14:02
• 2 followers
• 1 comment
• 0 votes