Adeline Morez
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Activity overview
Latest activity by Adeline Morez-
Adeline Morez created a post,
Picard LiftOver behaviour for multiallelic positions
Hello GATK community, This post is more of a question about LiftOver behaviour than a troubleshooting one.I want to lift over archaic human genomes from hg19 to hg38. I cannot understand how LiftOv...
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Adeline Morez commented,
Hi Genevieve, Many thanks for your reply. You can find the log below. Best, Adeline INFO 2021-10-27 14:53:43 MarkDuplicates********** NOTE: Picard's command line syntax is changing.************...
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Adeline Morez created a post,
MarkDuplicates TAG_DUPLICATE_SET_MEMBERS=true does not add DS and DI tags in the output BAM file
AnsweredHello GATK community, I am running: java -jar picard.2.26.3.jar MarkDuplicates I=input.coordsorted.bam O=output.markduplicates.bam M=metrics.txt TAG_DUPLICATE_SET_MEMBERS=true To get a DI tag assoc...