
Cher Wei Yuan
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FindBadGenomicKmersSpark running indefinitely
AnsweredDear GATK staff May I seek your help in troubleshooting FindBadGenomicGenomicKmersSpark? I wish to use it to generate a list of ubiquitous kmers to ignore for StructuralVariationDiscoveryPipelineSp...
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FilterVariantTranches Error: 'no variants with INFO score key "CNN_2D"'
AnsweredHello GATK staff and community I have encountered an issue while working with FilterVariantTranches as it does not detect the INFO score key "CNN_2D" in the input vcf. Please see below for more det...