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Ran Wei

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Recent activity by Ran Wei Sort by recent activity Recent activity Votes

  • Pileup output of GATK4 vs. GATK3

    Answered
    1. Community
    2. New User Advice

    Hello, I am updating our workflow from GATK3.x to GATK4.x. The current protocol depends on the refined bam files generated ("This app outputs the refined (deduplicated, realigned, and recalibrated)...

    • Ran Wei
    • 2 followers
    • 1 comment
    • 0 votes

  • Empty intersection error when applying intervals

    Answered
    1. Community
    2. New User Advice

    Hi, I am a first-time user of GATK. I am using the GATK4 haplotypecaller (parallel per-intervalbyns) version 2.0.1 embedded in the DNAnexus platform for variant calling. Several short intervals are...

    • Ran Wei
    • 4 followers
    • 8 comments
    • 0 votes