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lid.zigh

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Recent activity by lid.zigh Sort by recent activity Recent activity Votes

  • MarkduplicatesSpark failed

    Answered
    1. Community
    2. Other

    Hello , I have been running MarkDuplicatesSpark on one Sam file to get bam file and after couple of hours running it failed.  Could you please help me to figure out what the issue is. Thank you GAT...

    • lid.zigh
    • 2 followers
    • 3 comments
    • 0 votes

  • calling large scale structural variants

    Answered
    1. Community
    2. Special GATK Use Cases

    a)How do I call large scale structural variants using GATK version 4.2 and which command line I need to use?  Thank you, Lida 

    • lid.zigh
    • 2 followers
    • 1 comment
    • 0 votes