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lid.zigh

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Latest activity by lid.zigh
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    lid.zigh created a post,

    MarkduplicatesSpark failed

    Hello , I have been running MarkDuplicatesSpark on one Sam file to get bam file and after couple of hours running it failed.  Could you please help me to figure out what the issue is. Thank you GAT...

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    lid.zigh commented,

    Hello Geraldine Van der Auwera, I just started working with GATK4 and was looking for new version of RealignerTargetCreator and IndelRealigner and notice this post. Could you please confirm that no...

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    lid.zigh created a post,

    calling large scale structural variants

    Answered

    a)How do I call large scale structural variants using GATK version 4.2 and which command line I need to use?  Thank you, Lida