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Divon Lan

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    Divon Lan commented,

    1. Community
    2. Germline
    3. GATK4.1.3.0 HaplotypeCaller ERROR

    I ran into the same problem and developed a quick fix for it, using Genozip, in case it useful for anyone else: https://genozip.readthedocs.io/gatk-unexpected-base.html