Rafael Viana

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Latest activity by Rafael Viana
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    Rafael Viana commented,

    Very nice article.I just have 2 questions.1- Once you filter your variants and have the PASS flag.    Is there a tool to remove the ones without the PASS flag? 2- Here you get the differences betwe...

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    Rafael Viana commented,

    Hi Genevieve,Thank you for the response. To produce the exome we used commercial kits (Agilent Sure select v6).Reads were mapped to Homo Sapiens GRCh38p13.rel102.dna.primary_assembly.Qualimap finds...

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    Rafael Viana created a post,

    Created panel of normals returns empty vcf


    Hi I am trying to make my own panel of normals for human exome using gatk v4.1.9.0 (installed with conda).I am using a version of the genome where chromosomes are written just with the number (with...