Avatar

Wiebe Kooistra

Follow
  • Total activity 11
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 0
  • Subscriptions 2

Posts

Recent activity by Wiebe Kooistra Sort by recent activity Recent activity Votes

  • ArtificialHaplotypeRG makes variant heterozygous

    Answered
    1. Community
    2. Non-Human

    Dear GATK, Why do I see the Artificial Haplotype RG add more heterozygosity? In the top part we have the bam file after using HaplotypeCaller with the option --bamfile. In the lower part there is ...

    • Wiebe Kooistra
    • 2 followers
    • 5 comments
    • 0 votes

  • SNP VCF file and bamout not the same

    Answered
    1. Community
    2. Special GATK Use Cases

    Dear GATK, We are trying to retrieve a SNP that is present in the BAM file when using BWA-MEM. When looking at the bamout file we can see that there is a SNP (A->G), but when looking into the VCF f...

    • Wiebe Kooistra
    • Edited
    • 2 followers
    • 11 comments
    • 0 votes