Sarah Bonnin
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Recent activity by Sarah Bonnin Sort by recent activity-
HaplotypeCaller with additional annotation?
AnsweredHI all, I am trying to run HaplotypeCaller with the --annotation/-A parameter, but it doesn't work, so I'm obviously doing something wrong. I am running it on RNA-seq data. a) GATK version used: 4....
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vcf file for mm39 somewhere?
AnsweredHello, Where do I find a vcf file of known variants for the mm39 assembly? Is it available somewhere? I want to run the "RNAseq short variant discovery" pipeline on RNA-seq data that were already a...