Sarah Bonnin
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Recent activity by Sarah Bonnin Sort by recent activity-
Hi Pamela Bretscher, Thank you. I've tried several things and, apparently, the `-ERC GVCF` option was the issue. When I remove it, I get the annotation fields. Do you know why this is happening? Fr...
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Hi Pamela, Thank you for your reply. Today I have tried to run HaplotypeCaller with the newest version of GATK (4.2.0.0). While I do get a VCF file, I unfortunately don't get the fields "QD" and "F...
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Hi Pamela, Please, do so, thank you! And sorry for posting to the wrong forum. Best