Davy Deng
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question about Picard AddOrReplaceReadGroups
AnsweredHello, I have a 30X simulated bam file from running another pipeline and I was trying to run depth-of-coverage tool to get DOC but kept running into problems: 1. When I first ran depthofcoverage, i...
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Mutect2 with and without UMI information
AnsweredHello, I recently saw this post: https://gatk.broadinstitute.org/hc/en-us/articles/360043491652-When-HaplotypeCaller-and-Mutect2-do-not-call-an-expected-variant HaplotypeCaller and Mutect2 are op...