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Davy Deng

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Latest activity by Davy Deng
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    Davy Deng commented,

    1. Community
    2. General Discussion
    3. question about Picard AddOrReplaceReadGroups

    Hello Genevieve Brandt (she/her), Thank you so much for your response. I ran this on terras so here is the command part of the script and the docker information: command <<< java -jar /usr/gitc/p...

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    Davy Deng created a post,

    question about Picard AddOrReplaceReadGroups

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    1. Community
    2. General Discussion

    Hello, I have a 30X simulated bam file from running another pipeline and I was trying to run depth-of-coverage tool to get DOC but kept running into problems: 1. When I first ran depthofcoverage, i...

    • Davy Deng
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    Davy Deng created a post,

    Mutect2 with and without UMI information

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    1. Community
    2. New User Advice

    Hello, I recently saw this post: https://gatk.broadinstitute.org/hc/en-us/articles/360043491652-When-HaplotypeCaller-and-Mutect2-do-not-call-an-expected-variant HaplotypeCaller and Mutect2 are op...

    • Davy Deng
    • 3 followers
    • 3 comments
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