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Layne Rogers

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Latest activity by Layne Rogers
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    Layne Rogers created a post,

    Mutect2 -- How is the --max-population-af filter used in tumor-only mode?

    1. Community
    2. Somatic

    Hello, It was my understanding that the `--max-population-af` filter removes germline variants present in the gnomAD germline resource with allele frequencies greater than 0.01 (the reported defaul...

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    Layne Rogers commented,

    1. Technical Documentation
    2. Glossary
    3. Read groups

    **Edited for clarity 4/28/2023** Hello, I am hoping to get some clarification on the GATK read group classifications. Three questions: 1. We're confused about what sample hierarchy information RGSM...

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