Ben Oppenheimer
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Latest activity by Ben Oppenheimer-
Ben Oppenheimer created a post,
The provided reference alleles do not appear to represent the same position, TG* vs. TT*
Hi, I have the following error. I tried to run ValidateVariants and no issues were recognized. REQUIRED for all errors and issues: a) GATK version used: not sure, it was from the WARP JointGenotypi...
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Ben Oppenheimer created a post,
Exome Germline Single Sample with only BAM output
Hi, Is there a way to use the following WARP pipeline to only create an anlalysis-ready BAM and not to create a GVCF file: https://app.terra.bio/#workspaces/warp-pipelines/Exome-Analysis-Pipel...
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Ben Oppenheimer created a post,
Error in LiftOverIntervalList
I am not sure why I am getting this error. I am using the sequence dictionary from gcp-public-data--broad-references and the chain file from UCSC. REQUIRED for all errors and issues: a) GATK versio...