
Laura Sanz
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Recent activity by Laura Sanz Sort by recent activity-
Please update for GATK 4.3 "A USER ERROR has occurred: feature-file is not a recognized option"
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Thanks for your comment SkyWarrior I have read-write access in the output directory. I also tried moving --tmp-dir to another directory and it didn't work.
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Hi Allison, Those bam files had been generated using minimap2. I repeated the mapping to reference with bwa (https://github.com/lh3/bwa) and the problem got solved. I hope it helps. Laura