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    B created a post,

    Haplotypecaller: Unclear which reads are counted

    1. Community
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    REQUIRED for all errors and issues: a) GATK version used: 4.3.0.0b) Exact command used: shell('{config[gatk][path]} --java-options "-Xmx90g" HaplotypeCaller --disable-read-filter GoodCigarReadFilte...

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