Chase Mateusiak
Bioinformatics scientist at Washington University
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Activity overview
Latest activity by Chase Mateusiak-
Chase Mateusiak commented,
I'm not sure that this is helpful, but from looking at the gVCF files, it seems like there are multiple intervals, all with depth information, which span the base pair in question. When the interva...
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Chase Mateusiak commented,
The variant location is the BP in identified by the vertical bars, but yes, the browser isn't helpful here. I've attached a subset of the data. On this data, I ran the following commands to produce...
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Chase Mateusiak commented,
I wrote a reply, hit submit, and it isn't appearing. Not sure if there is a wait time, so apologies if this is a repeat in part. I'm trying v4.6.0 now. However, ``` gatk HaplotypeCaller \ -I $I...
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Chase Mateusiak created a post,
Haplotypecaller FORMAT:DP is affected by the interval in WGS
I am using Haplotypecaller without BQSR/VQSR for a non-model organism.I am interested in the depth over a single basepair coordinate, since it shows an anomaly with what I see in the browser (don't...
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Chase Mateusiak commented,
Bump for the last two requests for an exampleedit: providing the link to this article from all relevant "filter" commands would be nice. Additionally, a place to easily view a list of all these ava...