Isadora Machado Ghilardi
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Recent activity by Isadora Machado Ghilardi Sort by recent activity-
Call copy number variants with GermlineCNVCaller
REQUIRED for all errors and issues: a) GATK version used: 4.3 I`m following this pipeline here: https://gatk.broadinstitute.org/hc/en-us/articles/360035531152--How-to-Call-rare-germline-copy-number...
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ValueError in DetermineGermlineContigPloidy
REQUIRED for all errors and issues: a) GATK version used: 4.3b) Exact command used: gatk DetermineGermlineContigPloidy -L cohort.gc.filtered.interval_list --interval-merging-rule OVERLAPPING_ONLY -...
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gatk legacy bundles (where to get dbsnp_138.hg19.vcf.gz)
Hey! I'm new to sequencing and am attempting to get the file to perform BQSR. Could you please tell me how to obtain it? I tried the following command: wget ftp:/gsapubftp-anonymous@ftp.broadinstit...